Open source software for the analysis of intracellular particle motility and cytoskeletal polarity		By Russell S. Hamilton & Ilan Davis
Department of Biochemistry, University of Oxford

Contact:
    Russell.Hamilton -at- bioch.ox.ac.uk
    [www.ilandavis.com]    [www.particlestats.com]

[HOME] [ParticleStats_UserGuide.pdf] [Visitor Stats]

ParticleStats:Compare:

Select two excel files containing coordinate datasets for comparison. Next chose a Pause Definition Style to determine how the runs and paused are calculated. The variables for runs and pauses (Run Distance, Run Frames, Pause Distance, Pause Duration, Pause Speed, Pause Frames) can also be altered. The output options (Trails, Graphs, Regression) determine which graphs are produced by the ParticleStats:Compare program. Time Start/End specifiy a time range to perform the analysis, if not selected then the whole time range of the data sets are used. Tracking Dimensions and the Pixel Ratio are also customisable

The example takes 2-3 minutes to run, so please be patient

Run example Leave Excel File Input fields blank
      The Example are a wt experiment and variant from Oliviera et al, Nature Cell Biology, 2010, [DOI]
      The two excel files can be downloaded [File 1] [File 2]
Excel File 1 to Upload
Excel File 2 to Upload
Pause Definition Style
Graphs
Regression
Run Distance (min)
Run Frames (min)
Pause Distance (min)
Pause Duration (min)
Pause Speed (max)
Pause Frames (min)
Time Start
Time End
Tracking Dimensions
Pixel Ratio

Please cite: Hamilton, R.S., Parton, R.M., Oliveira, R.A., Vendra, G., Ball, G., Nasmyth, K. & Davis, I. (2010) ParticleStats: open source software for the analysis of particle motility. Nucl. Acids Res. Web Server Edition [DOI]

ParticleStats source code last updated on: Tue May 3 12:03:40 2011
Open Source
GNU License